The EU’s Court is usually thought of as driving ‘Europeanisation’. Its rulings make EU law more ‘harmonised’ and reduce differences between Member States. It is also – like all courts – supposed to make sure that law is consistent. The same concepts in different areas should have the same meanings – a basic concept of legality. We call these ideas ‘defragmentation’. We examine the EU Court’s decisions on substances of human origin (blood, tissues, cells etc). We show that – instead of only being about ‘harmonisation’ and consistency – the Court’s decisions also include ones that allow less harmonisation and more differentiation between EU Member States, and ones that allow for different meanings of concepts in different contexts. We call these ‘fragmentation’. We conclude that the fragmentation and defragmentation model we propose allows a better analytical frame than ‘harmonisation’ to promote greater understanding of EU law.